MmuALTA0019493-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000025876 | Unc5a
Description
unc-5 homolog A (C. elegans) [Source:MGI Symbol;Acc:MGI:894682]
Coordinates
chr13:55092241-55097301:+
Coord C1 exon
chr13:55092241-55092462
Coord A exon
chr13:55097155-55097157
Coord C2 exon
chr13:55097158-55097301
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AGTGTGGCCTCTGAACCCAGCAG
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTGCCCAGCAGAGTGCCACAGTGGCCAACCCAGTGCCTGGTGCCAACCCGGACCTGCTGCCCCACTTCCTGGTAGAGCCGGAGGACGTGTACATTGTCAAGAACAAGCCCGTGCTGCTGGTGTGCAAGGCTGTGCCCGCCACCCAGATCTTCTTCAAGTGCAACGGGGAATGGGTTCGCCAGGTCGATCACGTCATTGAACGCAGCACTGACGGCAGCAGCG
Seq A exon
CAG
Seq C2 exon
GATTGCCAACCATGGAGGTCCGGATCAACGTATCAAGGCAGCAGGTCGAGAAAGTGTTTGGGCTGGAGGAGTACTGGTGCCAGTGTGTGGCATGGAGCTCCTCAGGAACCACCAAAAGCCAGAAGGCCTACATCCGGATTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025876-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGTCATTGAACGCAGCA
R:
AACACTTTCTCGACCTGCTGC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: