Special

MmuALTA0020380-3/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151396136-151396916:-
Coord C1 exon
chr4:151396805-151396916
Coord A exon
chr4:151396229-151396343
Coord C2 exon
chr4:151396136-151396228
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTTGCCCTCTCCTACCCCAGCAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTCCGCAAGGAGAATCTCTTGGAACATGAAGCCAGGAATTGCATGAACCGCTCAGAACAG
Seq A exon
CATCCCCTACCCCAGGCAGACACTTACCAGCAGCGTTTGGAAGCCCCTGCAGAGGCTGCCGTCGCAGGCAGAGGCCCTCCCTGATGCTGGCCCTGCTTGCCCCTCACACTGCCAG
Seq C2 exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGACGGAGGATGGAGCTGCGCTTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-7-7,7-6,7-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.088 A=NA C2=0.337
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF100834=DUF2321=FE(41.1=100),PF145221=Cytochrome_C7=PD(51.4=94.7),PF134651=zf-H2C2_2=PD(72.0=47.4)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000117079





     
                   









    
Main Skipping Isoform:
ENSMUSP00000067521





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000114726
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:6646635-6646636 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:47663318-47663513 
LOW PSI
BtaALTA0033561-3/3
(ZBTB48)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAAACACACTGGGGAGAAACC

				
R: 
GCATCTCCCCTGTGTGAGACA

				
Band lengths: 
197-312

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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