MmuINT0177735 @ mm9
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151396136-151396916:-
Coord C1 exon
chr4:151396805-151396916
Coord A exon
chr4:151396229-151396804
Coord C2 exon
chr4:151396136-151396228
Length
576 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CTTGCCCCTCACACTGCCAGGTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTCCGCAAGGAGAATCTCTTGGAACATGAAGCCAGGAATTGCATGAACCGCTCAGAACAG
Seq A exon
GTACTTGGGAATTGGTCCAAGTATTTGTGGGCAGCAGCACAGTGCCTGTGTCTTCATGCCATCTGGGAAGGATCCTCAGGAAACCCTACGGGATTATAAAATAAGAACTGCGGGGCCTGGCAGGTCCGCATCCTAGTACTTGCCGGACACATGAGTTCAGAGGGCACAAGGGATATTTTGGGTTTGCCTGCCTGGGCTCCTGGTCTAGCTCCATCTTATGCTTTGGAGCAAGTAAAGTATTTGTGGGAGATGGCTGCCAGGAAGGGCCACTTTGTCGGCACCCCGCCCCTCCAAGTGGGTAGTGTTTGGCTAAACCCTGTCATCCTCTTCCCAGAGACTGGCCAGTAGCAGCTGGCTCTGTCTCTAGCCTGTCTGAAGCCAAGAAGGGTCTGGCGTGTGGTAGTGTGCAGTGCTCTGATGGTCAAGGCAGGCAGGTTACATGTTGCCCTCTCCTACCCCAGCATCCCCTACCCCAGGCAGACACTTACCAGCAGCGTTTGGAAGCCCCTGCAGAGGCTGCCGTCGCAGGCAGAGGCCCTCCCTGATGCTGGCCCTGCTTGCCCCTCACACTGCCAG
Seq C2 exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGACGGAGGATGGAGCTGCGCTTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-Zbtb48:NM_133879:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.169
Domain overlap (PFAM):
C1:
PF100834=DUF2321=FE(41.1=100),PF145221=Cytochrome_C7=PD(51.4=94.7),PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACACTGGGGAGAAACC
R:
GGCATCTCCCCTGTGTGAGA
Band lengths:
198-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: