DreINT0177296 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022323-25022626:-
Coord C1 exon
chr23:25022515-25022626
Coord A exon
chr23:25022416-25022514
Coord C2 exon
chr23:25022323-25022415
Length
99 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAATTTTGGGTTCGTGCCAGGTG
3' ss Score
6.55
Exon sequences
Seq C1 exon
GAGACACACTGGAGAAAAGCCGTTTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTG
Seq A exon
GTGAGTTTGATATTGAAGAACAATGCAAATAAGCACAATTGCTGCATACTAGTACTTACTGTACTTAATACAACTTGTCAAATTTTGGGTTCGTGCCAG
Seq C2 exon
GTGTTTTCATGTTCAAAATGTAGCATGACCTTTAAAAAGCGGCAAGAGCTGCGTCATCACACAGTCATGCACACAGGAGTGATGCCCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF041477=Nop14=PD(1.5=7.9),PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACTGGAGAAAAGCCGT
R:
TGTGTGATGACGCAGCTCTTG
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]