RnoINT0167021 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169194087-169194889:-
Coord C1 exon
chr5:169194778-169194889
Coord A exon
chr5:169194180-169194777
Coord C2 exon
chr5:169194087-169194179
Length
598 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CTTGCCCCTCACACTGCCAGGTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
Seq A exon
GTACTTGGGATTGGTCCAAGTAGTTGTGGGCAGCAGCATAGTAGCCTGTGTCTTCAAGCCATCTGGGAAGGATCCTCAGGAAACCCTACGGGATTATAAAATGAGATCTGCGGGGGCCTTGGATGTCATCACGTCCACATCCTAGTACATGTGGGACTCATGAGTTCAGAGGGCACAGGAGATAAACCCTGCAAGGATATTTTGGGTTTGCCTGCCTGGGCTCCTGGTCTAGCTCCATCTTACTCTCTGGAGTAAGAAAAGTGTGTGTGGGAGATGGCTGCTGGGAAGGGCCACCTTGTCAGCCCCCCAGCCCCAAGTGGGTAGTGTTTGGCTAAATCCCGTCCTTCTCTTCCCAGAGACTGGTCAGTACCAGCTGGCTCTGTCTTTAGCCTGTCTGGAGCCGAGAAGGGTCTGGCGTGTGGTAGTGTGCAGTGCTCTGATGGTCAAGGCAGGCAGGTTACATGTTGCCCTCTCCTACCCCAGCATCCCCTACCCCAGGCAGACACTTCCCAGCAGCGTTTGGAAGCCCCTGCAGAGGCTGCCGTCGCAGGCAGAGGCCCTCCCTGATGCTGGCCCTGCTTGCCCCTCACACTGCCAG
Seq C2 exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACACTGGGGAGAAACC
R:
GGCATCTCCCCTGTGTGAGA
Band lengths:
198-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]