BtaINT0163648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47663318-47664103:-
Coord C1 exon
chr16:47663992-47664103
Coord A exon
chr16:47663411-47663991
Coord C2 exon
chr16:47663318-47663410
Length
581 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CCTGCCCCTCATGCTGCCAGGTC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
Seq A exon
GTACCTGAGGGCCAGCCAGGGTCCTGCTGGGCAGGCACACGCTGGCTTCTGTCTCTCTTCCACCTGGGAGGGGCCCCCAGGGGACTGGCCTGACAGGACTGTAGACTCGAGAGCCGCAGGGTCCTTGGATGTCATCGGGTCCCCTGCCTGGTATGACAGTGGGGACATAGGCCCCAAGGGCAGAAGGGACAAGCCCAGGAGGGACACTGCAGGAGGTATCTTGGGTTTGCCTGCCTGGGTTCCTGGCTTTGGAGAAGGGGGCTAACTGCTGAGAAAGGCCACCTGGCCACCTCCCCCACCCCCCGGTGGCCTAAACCCCGCTTCCTAGAGGCTGGTCACCAGTCAGGGTGGGGGTCACAGGTGAGGCCATTCGGCCTTTGTCCCTGGTCTGACTCTCAGCCTGGCGTGGTGGGCTTGCAACACTCCGCGATGTCACAGTCAGGGCAAGCAGATTATGTGTTGCCCTCTCCCACCCTAGCGCCCCCACCCCTTTGGGCAGACTCTTGCCAGCTGTGAGTGGAAGCCCGAGCAGAGGCCCTCCCCACACTGATGCCAGCCCCGCCTGCCCCTCATGCTGCCAG
Seq C2 exon
GTCTTCACGTGCTCTGTGTGCCAGGAGACGTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCCCACACGGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACACTGGGGAGAAACC
R:
GGCATCTCCCCCGTGTGG
Band lengths:
198-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development