RnoALTA0045306-5/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169194087-169194889:-
Coord C1 exon
chr5:169194778-169194889
Coord A exon
chr5:169194156-169194294
Coord C2 exon
chr5:169194087-169194155
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTTGCCCTCTCCTACCCCAGCAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
Seq A exon
CATCCCCTACCCCAGGCAGACACTTCCCAGCAGCGTTTGGAAGCCCCTGCAGAGGCTGCCGTCGCAGGCAGAGGCCCTCCCTGATGCTGGCCCTGCTTGCCCCTCACACTGCCAGGTCTTCACATGCTCCGTATGCCAG
Seq C2 exon
GAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595-7-9,7-8,7-7,7-6,7-5-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACACTGGGGAGAAACC
R:
GCATCTCCCCTGTGTGAGACA
Band lengths:
173-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]