MmuALTA0020548-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:29903905-29906104:-
Coord C1 exon
chr7:29906054-29906104
Coord A exon
chr7:29904044-29904059
Coord C2 exon
chr7:29903905-29904043
Length
16 bp
Sequences
Splice sites
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
3' ss Seq
TACAAGATCTTCTTCCACAGCAC
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTGCTGCTTCCATTGAGTCTTAAGGGCAAGAAGTCATCCGAGATGATTCCG
Seq A exon
CACTTCTTCCTCACAG
Seq C2 exon
CTCTGACTGAACTCATAGAGGACCGCTAAGCTTCTGGTTGCTGAGAGGACAGGGTCTAGACCCAGCGTGATCATGCCAACTGACTGGACTTCAACCCTGGAAGCTACACCACTGGCCCCAGAGGATCTTGGGAGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAAGAAGTCATCCGAGA
R:
GCATGATCACGCTGGGTCTAG
Band lengths:
105-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types