MmuINT0178839 @ mm10
Intron Retention
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:29903900-29906572:-
Coord C1 exon
chr7:29906210-29906572
Coord A exon
chr7:29904060-29906209
Coord C2 exon
chr7:29903900-29904059
Length
2150 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TACAAGATCTTCTTCCACAGCAC
3' ss Score
6.16
Exon sequences
Seq C1 exon
TTTTTCTCCTCTGAATCCCCTGCACCGCATGGTTTCTTCCACAGAGAGCAGGTTATTCAGAGTGGCAACTAGGTTTCTCAGTGTTACAGAACTCATGACCCCGTGTCCAGAAGAACCTCCTCTTATCGGATGATGCTCGGACGTGGGCCACAGTGCTTGGGTCTACGTTCTTTATCTCATTCCGTGTAATCTGGCTGGATAGCTATTCCTCTGCTGTACGGAATGCGTAAATTTGAAAGATGGCGGCCTACGCGGCATCTCTGGGCACGACTATGTTAATCGATCCTCCTAAGGAATTGTGTACAAAGGATCTTGAAGCTATGTAAGCACGCTGTGGGTTATTGGAGTCCTCTGGCATCGGAG
Seq A exon
GTAATGCTGAGCATGCGCAGTACTAATAGCCCAGGGCCTTTTTTTTTTTAAGACCGGAAGTGACCTTGGTGCTTGAAGGTGGTTCCCTCCCCCTCCCCCTCCCCCGTGCTGCTTCCATTGAGTCTTAAGGGCAAGAAGTCATCCGAGATGATTCCGGTTGGTTTCAACTAGAATTCTGTGGAGTCAGTAGTGTGTGCCTATGTTGGGAGTTAGTGACCGGGTGCTGTCTGCTGTGTTGATGGTTGTCAGTGGCAAGGATTTCTCCGATCAATAACGGAACTCTGAGTTTTGGAGGAGGGAGGTCGGCCGGGTGATGTGTGATTGTGATGACAAGTGAGTGATGTTAGGGAATGTGATGAGTGGCTGAGGGTCTCGTGGGGTTTTTGATAAGTTTGCTTTCTAACCCCAAAGTTTAGCTTATTAATTTTTAGCCTTGGTTAATGTAATACTTTACATTCTTATGTATTTATATGTAGATTTTTTATTGTCTTTTAAATATAAATGGCTTTCTTTTTTAATTCGTTTTCTGTGATCCAGGAGTCATTTGGAAATGCATTTTCTGTTTCAGATAATATCTCTGGGTAGTGGTCTAGCTGAAAAATGTTTTATGGTCGATACCATAATCACTTTTCATAAATGCCACATTGCATAAAAATAATCGTTCCTCAATTGTGTTGTGTGTGTATGCTTATGTATATACATATATCGCAATATGTTGTGATATATATTAATATATTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGCAGCCAGGGCTACATAGAGAAACCCTGCCTCGAAAAGCAAAAAAAAAAACAAACAAACAAACAAACAAAAAAACCACACACACACACACACACACACATATATGTATGTATGGATATATATATATATATATATATATATATATATATACACACACACATATACATACACAAATACACATATATATTGTGTGACCATCATATGACCTTACAGTTTTGCCTTTGTTTTGTTTTGTTTTTTGGAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGTCTCAAACTCACAGAGATCCACCCTCCTATACCTCCAGATTTCTGGGATTAAAGGCCTGTATCACCACACCAGCAGACATTACAGATTTGGTTTTTAAATTTATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCTGAGCCATATCTCCAGCCCCCTTAGAGATTTTTTTTTTTTTTTTTTTTGTCTGCTTAGTTGTGGAGGGATATTGCTCACAATGGAAATGTAATTTGTCCATCTCTCTTTGGTCCATTTCTGGTTTATATGTTTGAAGTTATATTGTTATCAACACTTATGTGTATTTTTACAAAATATATTTATTTTTTGAAGAGTCTATATGTATACAATGTATTTTGGTCTCACCAACCCTTACTACATCCCTCCAGTTATTTTTAATAATAGGTATGACTAAGTAGTTCAAGGAATATTGTAGCAATTAGAGTGTCCACCATAAGTTTGTAAAAGAGTTTAGTTTCACAAATATCTTTCCATTTTGCAAGTTTTCTTTCTTTTGTCCGGTTCTTACCCCTTGGCTTTTTAAAAGCATTGCTATGTTTCTTATATGGTAGTAGGCGCTTTACCCTCTAACATGTCTCCCCGGACCCAGATTTTCTTAAATTTTCTATTCTCTCAGCACTGTTTCTTGAGGCTAGTCCCTGGTACAACAATTTCAGCATAATAATGGAGACTAATTAGCATAAATTCTTAGATCTCTAGACTTGCTGGAGCAGAAGTCATGGGAGTGAGGCTGAGAATTTTTAACTATATTTTGACAATACCTCTAGATAATTTGAGTGCATACCTGCTCAAGTTTGAGAACGACTGCTCTGTGAGGTAACTGGCATGTGTTTCAGTGGTGAATGTCTAATGACTAAGGATTTGACATTTCTGGGTATCTTGGTATCTCTGAGCGGCTCCTTACAAGATCTTCTTCCACAG
Seq C2 exon
CACTTCTTCCTCACAGCTCTGACTGAACTCATAGAGGACCGCTAAGCTTCTGGTTGCTGAGAGGACAGGGTCTAGACCCAGCGTGATCATGCCAACTGACTGGACTTCAACCCTGGAAGCTACACCACTGGCCCCAGAGGATCTTGGGAGCTCATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040:ENSMUST00000162592:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types