HsaINT0187759 @ hg38
Intron Retention
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:HGNC:30948]
Coordinates
chr19:37207040-37210549:-
Coord C1 exon
chr19:37210459-37210549
Coord A exon
chr19:37207255-37210458
Coord C2 exon
chr19:37207040-37207254
Length
3204 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTCT
5' ss Score
-0.45
3' ss Seq
CGTGGACATTGTTTTTCTAGGTT
3' ss Score
8.66
Exon sequences
Seq C1 exon
GGTGCTAGAAGTCGGACCGGAAGTGGAAGTGGTCCCCGAAGGCTATTTCGCCGCTGGCGTCAGGACTATTTTCACGTTTTAATGCCGAGAG
Seq A exon
GTCTCTGTGACGATTTTGGTTGGTTGCAATTAGGGATTCTGTGAAGTCAGTAATAGAGGAGTTGTCTGTGGAATTAGTGATGGTGGTTTCGGGGCATGGTGATGGGGGTCTGTGACGTCCGTTGATGGTTGTCTGTGACAGGGATTTCTCGGGTCATTGATGGGGCTCTTTGGGATGAGTGATTGGGGTTTGGGGGTCAGTGACGGGAGTCTGTGGTCAGTGACTGAGGGCCTGTAGGGTCAGCTATGGTGGTCGGTGAGGACTGTGATCAGCTTGCTTTCTGACCTGAGTTGAAAGTTCAGTTCTTTCCATTTCAGCCTGTAATATAAAGATTAACAAGTTTTGATGTGTAGCAGTTTCGTATTGTTCAAATCTAAGTGTTTAAAAATTTTTTTCAGTAATTGTTTTTCTTTGACCCATGAGCTGTTTAGAAGTGCACTTTATGGCCGGGCGCGGTGGCTCAAACCTGTAATCCCAGCACTTTGGGAGACCCAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTTGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCGGTGAGCCCAGATCTTGCCACTGCACTCCAGCCTGGGCCACAGAGCACCAAAAAAAAAAAAAAAAAAAAGAAGTGCACTTTATGTTTCAATTAGTGTCTGTAGGTGATGCTTCAGTTGAACAATTGCTTTATGGCCTAGTTCTTCCTCATTTTTCATAAATGTCACATCTATTACATGAAAAGAGTGTAATATGTTCTCTAATTTGTATTGTTATGGATATTAATCATATGTTATATATATTATGTATCTCCTCACAGATTATTTTGTTGAGGAAGGTAAACTACTCACATTGGAAAAGTTATTTGTCCACCTGTCCTTTCTTCTGTTTCTGCTTTATATATTTAAAACTATATTATTGGGATCAGTTGAGTGTATTGCTAGATATGACTGACCGGGCCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGTGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGAAAAACACCTCTAACCAAAAATACAAAAATTAGCTGGGTGTGGTGGTGGGTGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGGGAGGCGGAGGTCGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCGGGGCGACAAGAGTGAAACTCCATCTCAAAAAAATAAAAAAATAGATATGACTAAATAGCTCAAAAGACATTATAGCAATTCAAGCTTCAACCAATAATTTATAAAAGCAATTTGCCTAAATGCTTTCCAACAGTGGATGTTGTCACTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGCCGTGATCTCCGCTCATTGCAACCTCTGCTTCCCTGGTTCAAGCTATTCTCCTGTCTTAGCCTCTTGAGTAGCTGGGATTTCAAGTGCCCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGCGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCCATTGTGCTTGGTCTGTTACTTTTTTAAAGCTTTTATGATTCTAAGGAAAATTTCTCTCTAATTGTTCTGACGCGTTTTTCTTTTAGTTAAGTTGGTATCTTTTTGTTAATTGCCATTTGCTTCCTTTTCTCTGAATTTTCATACCTTTTCCAGTTTCTTTTATTTTTTTTTTTGGCCTTTTTTGCTTAGTGATTGCTTAGAGTTAACATTACAAGCAAGCTATCATCACATATTGAAAAAATTTCTTATATATCTTTATGTCGAATTTTATGGTTTATTTAAACATATAATTAGGAAACATAATCAGAAATACCTGTTTTTTTCTGTTATAGCTTCTGGGTTTCCTGTCATGTGTAATAAGATCCTTATCACCCCACCACAATGCTATACAAATATATAGTCTGAAAATTATTTTAATATCCTTAGGGGTTTTAAAAAATGCATGTATTTAAATGTTTAGTGCTCCTGGAATTTGTCTACTTAATAGTGTGAGGTGGGTTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGAGATCAAGATCATCCCAGCCAACATGGTGAAACCCTGACTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGTCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGTAGAATCACTTGAACTCTGGAGGTGGAGGTTGCAGTGAGATGAGGTTGTGTCACTGCACTCCAGCCTGGCCACAGAGCGAGACCCCATCTTAAAAGAAAAAAATATTGTGTGAGGTGGAGATCTAGTTTGTTTTATTCCAGATGCATGGCCAATTGCATGCACCAATTGGGGATATGTATACAATGAATGCCGTGTGCACACTCAATCGCATATCATTTTTATTTCATATATAGATCAACATTGTCTGATATGTTTATTATCTTACTTGTTTTGATGACATGGTTTTCTGTATTACGTTTTAATATAGTGCATGGTAATTGCTGATATTTATTGCGTGATTCTTGCATGGCAGGGAGGCATTGAGTACTTTAAAAGCATAATCTCATTTAATCTTAGTAACTGTGACACAGGCATTTTCATCCTTATTTCTGAAACAAAATCTGAGTAACTTCTTTATATTCTCATTGTTGAAAAGTGGTACAGCTGCAGTTCAAATCTGCAGTAATGTTACTCTAAATTTCATGGCTTTTCCCATATTTCAGCACTGTTCTCCACAGTTCTGAAAGTGTGGTTCTTGTACCAGCAGCATCAGCATTTCCTGGGCACTTATTAGAAAATAAAATTCTTAGGGCCTACCTTAGACCCATCGAAGGGGTGAAGTTGAGAATTTTAAACTATGTTTTAACAAGCCCTCCAGGTGACTTGAATGCATACCTACGTTTGGGAACCACTGCTCTGGTTTCTAGCGCAGGGACCTGCACCTTGGTGTATCCAGGAAGTGTTTATGTAGTGAATGTTGAATGACTACGTGGACATTGTTTTTCTAG
Seq C2 exon
GTTCTTGGGTGTCTCTGGGGAGTCCCTGGGCCAGACCTTCCTCCAGACTCCAGCCCACCTCTTCGGAGCAGCTCTGCTGAGTTCACAGATGACCACTAAACTTCAGGCACCCTAGACAAAAAGGGTTGAGATCCAGTGTGGCCATGCCAGCTAGTTGGACCTCACCCCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680:ENST00000392156:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains