MmuINT0178839 @ mm9
Intron Retention
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:30688924-30691123:-
Coord C1 exon
chr7:30691073-30691123
Coord A exon
chr7:30689079-30691072
Coord C2 exon
chr7:30688924-30689078
Length
1994 bp
Sequences
Splice sites
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
3' ss Seq
TACAAGATCTTCTTCCACAGCAC
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTGCTGCTTCCATTGAGTCTTAAGGGCAAGAAGTCATCCGAGATGATTCCG
Seq A exon
GTTGGTTTCAACTAGAATTCTGTGGAGTCAGTAGTGTGTGCCTATGTTGGGAGTTAGTGACCGGGTGCTGTCTGCTGTGTTGATGGTTGTCAGTGGCAAGGATTTCTCCGATCAATAACGGAACTCTGAGTTTTGGAGGAGGGAGGTCGGCCGGGTGATGTGTGATTGTGATGACAAGTGAGTGATGTTAGGGAATGTGATGAGTGGCTGAGGGTCTCGTGGGGTTTTTGATAAGTTTGCTTTCTAACCCCAAAGTTTAGCTTATTAATTTTTAGCCTTGGTTAATGTAATACTTTACATTCTTATGTATTTATATGTAGATTTTTTATTGTCTTTTAAATATAAATGGCTTTCTTTTTTAATTCGTTTTCTGTGATCCAGGAGTCATTTGGAAATGCATTTTCTGTTTCAGATAATATCTCTGGGTAGTGGTCTAGCTGAAAAATGTTTTATGGTCGATACCATAATCACTTTTCATAAATGCCACATTGCATAAAAATAATCGTTCCTCAATTGTGTTGTGTGTGTATGCTTATGTATATACATATATCGCAATATGTTGTGATATATATTAATATATTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGCAGCCAGGGCTACATAGAGAAACCCTGCCTCGAAAAGCAAAAAAAAAAACAAACAAACAAACAAACAAAAAAACCACACACACACACACACACACACATATATGTATGTATGGATATATATATATATATATATATATATATATATATACACACACACATATACATACACAAATACACATATATATTGTGTGACCATCATATGACCTTACAGTTTTGCCTTTGTTTTGTTTTGTTTTTTGGAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGTCTCAAACTCACAGAGATCCACCCTCCTATACCTCCAGATTTCTGGGATTAAAGGCCTGTATCACCACACCAGCAGACATTACAGATTTGGTTTTTAAATTTATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCTGAGCCATATCTCCAGCCCCCTTAGAGATTTTTTTTTTTTTTTTTTTTGTCTGCTTAGTTGTGGAGGGATATTGCTCACAATGGAAATGTAATTTGTCCATCTCTCTTTGGTCCATTTCTGGTTTATATGTTTGAAGTTATATTGTTATCAACACTTATGTGTATTTTTACAAAATATATTTATTTTTTGAAGAGTCTATATGTATACAATGTATTTTGGTCTCACCAACCCTTACTACATCCCTCCAGTTATTTTTAATAATAGGTATGACTAAGTAGTTCAAGGAATATTGTAGCAATTAGAGTGTCCACCATAAGTTTGTAAAAGAGTTTAGTTTCACAAATATCTTTCCATTTTGCAAGTTTTCTTTCTTTTGTCCGGTTCTTACCCCTTGGCTTTTTAAAAGCATTGCTATGTTTCTTATATGGTAGTAGGCGCTTTACCCTCTAACATGTCTCCCCGGACCCAGATTTTCTTAAATTTTCTATTCTCTCAGCACTGTTTCTTGAGGCTAGTCCCTGGTACAACAATTTCAGCATAATAATGGAGACTAATTAGCATAAATTCTTAGATCTCTAGACTTGCTGGAGCAGAAGTCATGGGAGTGAGGCTGAGAATTTTTAACTATATTTTGACAATACCTCTAGATAATTTGAGTGCATACCTGCTCAAGTTTGAGAACGACTGCTCTGTGAGGTAACTGGCATGTGTTTCAGTGGTGAATGTCTAATGACTAAGGATTTGACATTTCTGGGTATCTTGGTATCTCTGAGCGGCTCCTTACAAGATCTTCTTCCACAG
Seq C2 exon
CACTTCTTCCTCACAGCTCTGACTGAACTCATAGAGGACCGCTAAGCTTCTGGTTGCTGAGAGGACAGGGTCTAGACCCAGCGTGATCATGCCAACTGACTGGACTTCAACCCTGGAAGCTACACCACTGGCCCCAGAGGATCTTGGGAGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040-Zfp27:NM_011754:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTTCCATTGAGTCTT
R:
ATGAGCTCCCAAGATCCTCTGG
Band lengths:
206-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: