HsaINT0187759 @ hg19
Intron Retention
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:30948]
Coordinates
chr19:37697942-37701451:-
Coord C1 exon
chr19:37701343-37701451
Coord A exon
chr19:37698157-37701342
Coord C2 exon
chr19:37697942-37698156
Length
3186 bp
Sequences
Splice sites
5' ss Seq
TTGGTTGGT
5' ss Score
2.01
3' ss Seq
CGTGGACATTGTTTTTCTAGGTT
3' ss Score
8.66
Exon sequences
Seq C1 exon
GGTGCTAGAAGTCGGACCGGAAGTGGAAGTGGTCCCCGAAGGCTATTTCGCCGCTGGCGTCAGGACTATTTTCACGTTTTAATGCCGAGAGGTCTCTGTGACGATTTTG
Seq A exon
GTTGGTTGCAATTAGGGATTCTGTGAAGTCAGTAATAGAGGAGTTGTCTGTGGAATTAGTGATGGTGGTTTCGGGGCATGGTGATGGGGGTCTGTGACGTCCGTTGATGGTTGTCTGTGACAGGGATTTCTCGGGTCATTGATGGGGCTCTTTGGGATGAGTGATTGGGGTTTGGGGGTCAGTGACGGGAGTCTGTGGTCAGTGACTGAGGGCCTGTAGGGTCAGCTATGGTGGTCGGTGAGGACTGTGATCAGCTTGCTTTCTGACCTGAGTTGAAAGTTCAGTTCTTTCCATTTCAGCCTGTAATATAAAGATTAACAAGTTTTGATGTGTAGCAGTTTCGTATTGTTCAAATCTAAGTGTTTAAAAATTTTTTTCAGTAATTGTTTTTCTTTGACCCATGAGCTGTTTAGAAGTGCACTTTATGGCCGGGCGCGGTGGCTCAAACCTGTAATCCCAGCACTTTGGGAGACCCAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTTGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCGGTGAGCCCAGATCTTGCCACTGCACTCCAGCCTGGGCCACAGAGCACCAAAAAAAAAAAAAAAAAAAAGAAGTGCACTTTATGTTTCAATTAGTGTCTGTAGGTGATGCTTCAGTTGAACAATTGCTTTATGGCCTAGTTCTTCCTCATTTTTCATAAATGTCACATCTATTACATGAAAAGAGTGTAATATGTTCTCTAATTTGTATTGTTATGGATATTAATCATATGTTATATATATTATGTATCTCCTCACAGATTATTTTGTTGAGGAAGGTAAACTACTCACATTGGAAAAGTTATTTGTCCACCTGTCCTTTCTTCTGTTTCTGCTTTATATATTTAAAACTATATTATTGGGATCAGTTGAGTGTATTGCTAGATATGACTGACCGGGCCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGTGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGAAAAACACCTCTAACCAAAAATACAAAAATTAGCTGGGTGTGGTGGTGGGTGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGGGAGGCGGAGGTCGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCGGGGCGACAAGAGTGAAACTCCATCTCAAAAAAATAAAAAAATAGATATGACTAAATAGCTCAAAAGACATTATAGCAATTCAAGCTTCAACCAATAATTTATAAAAGCAATTTGCCTAAATGCTTTCCAACAGTGGATGTTGTCACTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGCCGTGATCTCCGCTCATTGCAACCTCTGCTTCCCTGGTTCAAGCTATTCTCCTGTCTTAGCCTCTTGAGTAGCTGGGATTTCAAGTGCCCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGCGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCCATTGTGCTTGGTCTGTTACTTTTTTAAAGCTTTTATGATTCTAAGGAAAATTTCTCTCTAATTGTTCTGACGCGTTTTTCTTTTAGTTAAGTTGGTATCTTTTTGTTAATTGCCATTTGCTTCCTTTTCTCTGAATTTTCATACCTTTTCCAGTTTCTTTTATTTTTTTTTTTGGCCTTTTTTGCTTAGTGATTGCTTAGAGTTAACATTACAAGCAAGCTATCATCACATATTGAAAAAATTTCTTATATATCTTTATGTCGAATTTTATGGTTTATTTAAACATATAATTAGGAAACATAATCAGAAATACCTGTTTTTTTCTGTTATAGCTTCTGGGTTTCCTGTCATGTGTAATAAGATCCTTATCACCCCACCACAATGCTATACAAATATATAGTCTGAAAATTATTTTAATATCCTTAGGGGTTTTAAAAAATGCATGTATTTAAATGTTTAGTGCTCCTGGAATTTGTCTACTTAATAGTGTGAGGTGGGTTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGAGATCAAGATCATCCCAGCCAACATGGTGAAACCCTGACTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGTCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGTAGAATCACTTGAACTCTGGAGGTGGAGGTTGCAGTGAGATGAGGTTGTGTCACTGCACTCCAGCCTGGCCACAGAGCGAGACCCCATCTTAAAAGAAAAAAATATTGTGTGAGGTGGAGATCTAGTTTGTTTTATTCCAGATGCATGGCCAATTGCATGCACCAATTGGGGATATGTATACAATGAATGCCGTGTGCACACTCAATCGCATATCATTTTTATTTCATATATAGATCAACATTGTCTGATATGTTTATTATCTTACTTGTTTTGATGACATGGTTTTCTGTATTACGTTTTAATATAGTGCATGGTAATTGCTGATATTTATTGCGTGATTCTTGCATGGCAGGGAGGCATTGAGTACTTTAAAAGCATAATCTCATTTAATCTTAGTAACTGTGACACAGGCATTTTCATCCTTATTTCTGAAACAAAATCTGAGTAACTTCTTTATATTCTCATTGTTGAAAAGTGGTACAGCTGCAGTTCAAATCTGCAGTAATGTTACTCTAAATTTCATGGCTTTTCCCATATTTCAGCACTGTTCTCCACAGTTCTGAAAGTGTGGTTCTTGTACCAGCAGCATCAGCATTTCCTGGGCACTTATTAGAAAATAAAATTCTTAGGGCCTACCTTAGACCCATCGAAGGGGTGAAGTTGAGAATTTTAAACTATGTTTTAACAAGCCCTCCAGGTGACTTGAATGCATACCTACGTTTGGGAACCACTGCTCTGGTTTCTAGCGCAGGGACCTGCACCTTGGTGTATCCAGGAAGTGTTTATGTAGTGAATGTTGAATGACTACGTGGACATTGTTTTTCTAG
Seq C2 exon
GTTCTTGGGTGTCTCTGGGGAGTCCCTGGGCCAGACCTTCCTCCAGACTCCAGCCCACCTCTTCGGAGCAGCTCTGCTGAGTTCACAGATGACCACTAAACTTCAGGCACCCTAGACAAAAAGGGTTGAGATCCAGTGTGGCCATGCCAGCTAGTTGGACCTCACCCCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680-ZNF585B:NM_152279:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.875
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)