MmuALTA0020573-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19445668-19446547:+
Coord C1 exon
chr9:19445668-19445698
Coord A exon
NA
Coord C2 exon
chr9:19446432-19446547
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTCCTCTCTGGACTCTGCAGATA
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATGGCTACCATCAGTCTATCTCCCAAGTTTG
Seq A exon
NA
Seq C2 exon
ATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCATCAGTCTATCTCCCA
R:
AGCATGGCAAGCAAACAAACC
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: