MmuEX0053217 @ mm9
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19445668-19447168:+
Coord C1 exon
chr9:19445668-19445698
Coord A exon
chr9:19446408-19446547
Coord C2 exon
chr9:19447042-19447168
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTCTTGCCTTAGCTA
3' ss Score
7.99
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATGGCTACCATCAGTCTATCTCCCAAGTTTG
Seq A exon
CTATGTCCTCTCTGGACTCTGCAGATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
Seq C2 exon
GAGTCTGTGACATTTCAAGATATTGCTGTGGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCCCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCATCAGTCTATCTCCCA
R:
ACTTAGATTGCTATAATTCTCCAGCA
Band lengths:
149-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: