HsaEX0073400 @ hg19
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:13507]
Coordinates
chr19:9266601-9268070:+
Coord C1 exon
chr19:9266601-9266717
Coord A exon
chr19:9267288-9267424
Coord C2 exon
chr19:9267944-9268070
Length
137 bp
Sequences
Splice sites
3' ss Seq
AACCCTGTTTTCTCCTCCAGCCA
3' ss Score
9.38
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATGCCAGCTTGGAGAGTCACGTGAGAGCAAGAGAGTAGCTTTCTGGTTGTCCTGGTGCCCTGCTCAGGCAAACTGACTGCCATTCTCTGAGGATGGCAGCTCTGTCCCCCACATTTG
Seq A exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
Seq C2 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.228 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGCTTGGAGAGTCACG
R:
CCAGTGAAGTGAGGTTGCTGT
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)