RnoEX0101245 @ rn6
Exon Skipping
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19886382-19887878:+
Coord C1 exon
chr8:19886382-19886412
Coord A exon
chr8:19887103-19887242
Coord C2 exon
chr8:19887752-19887878
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTTTCTTGCCTTAGCTA
3' ss Score
7.08
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATGGCTACCATCTGTCTGTCTCCCAAGTTTG
Seq A exon
CTATGTCCTCTCTGGGCTCTGCAGATAACCAGGAATCAGAATTTCCTCTTCCATCAAAATGTGATTCTTGTCATCAGAGTTTGAGTTTGTTTGCTTGCCGTGCTCCAGAGCCTGATACACCAGCTCATGTTTATTCTCAG
Seq C2 exon
GAGTTCGTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684_MULTIEX2-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCATCTGTCTGTCTCCCA
R:
ACTTAGATTGCTATAATTCTCCAGCA
Band lengths:
148-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]