BtaEX0041231 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14742555-14743992:+
Coord C1 exon
chr7:14742555-14742674
Coord A exon
chr7:14743294-14743436
Coord C2 exon
chr7:14743866-14743992
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTCTCTCTTCTCTAGCTA
3' ss Score
8.31
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
ATGTCCGCTCCAGGAGACCCATGAGAGAGAAAGTAGCTTCCTGGTCCAAGGCCCTGTTCTTCAGGCAGATTTACTGTCATTCTCGCAAGATGGCAGCTCTCGGCCTGGCTCCCACATGTG
Seq A exon
CTATGCCCAGTCAGGAGCCTGCCTATATCCATGAGTCAGAAGTTCCTCTTTCTTCAAAAGACCATTCCTGTCCCCAGGATGTGGACCTGTTTGCATGCAATGGCCTGGAGCCTCATACATCAACCAGTGTTGAACCATCCCAG
Seq C2 exon
GAATCAGTGACTTTCCAGGATGTTGCTGTGGACTTCACTGAGAAGGAGTGGCCCTTGCTGGACTCTACTCAGAGAAAACTATACAAAGATGTGATGCTGGAGAACTACAGCAACCTTGCTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.417 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCGCTCCAGGAGACC
R:
GGTTGCTGTAGTTCTCCAGCA
Band lengths:
235-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development