HsaEX0073400 @ hg38
Exon Skipping
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9155925-9157394:+
Coord C1 exon
chr19:9155925-9156041
Coord A exon
chr19:9156612-9156748
Coord C2 exon
chr19:9157268-9157394
Length
137 bp
Sequences
Splice sites
3' ss Seq
AACCCTGTTTTCTCCTCCAGCCA
3' ss Score
9.38
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATGCCAGCTTGGAGAGTCACGTGAGAGCAAGAGAGTAGCTTTCTGGTTGTCCTGGTGCCCTGCTCAGGCAAACTGACTGCCATTCTCTGAGGATGGCAGCTCTGTCCCCCACATTTG
Seq A exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
Seq C2 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-'4-6,'4-5,7-6
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.101 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGCTTGGAGAGTCACG
R:
CCAGTGAAGTGAGGTTGCTGT
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development