MmuALTA0020669-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000074500 | Zfp558
Description
zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]
Coordinates
chr9:18461340-18468046:-
Coord C1 exon
chr9:18467920-18468046
Coord A exon
chr9:18461404-18461416
Coord C2 exon
chr9:18461340-18461403
Length
13 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTATTTACATATCAATTCAGTTA
3' ss Score
5.21
Exon sequences
Seq C1 exon
GAATTGGTGTCCTTCGAAGATGTGACTGTACAGTTCACACAGGAGGAGTGGGCTCTGTTGGATCCTTTACAAAGAACTCTGTACAGGAACGTAACGCTGGAAAACTGGAAGAACCTGGCCTCACTTG
Seq A exon
TTATTTATTCCAG
Seq C2 exon
GTTCCCTCTTGATCATCCCACACATCAGCTTCCATGACCTGATCCCCTGGATTCTTAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074500-9-15,9-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAGGAACGTAACGCTGG
R:
ATCCAGGGGATCAGGTCATGG
Band lengths:
100-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types