MmuEX0053449 @ mm10
Exon Skipping
Gene
ENSMUSG00000074500 | Zfp558
Description
zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]
Coordinates
chr9:18459657-18468046:-
Coord C1 exon
chr9:18467920-18468046
Coord A exon
chr9:18461336-18461403
Coord C2 exon
chr9:18459657-18459752
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATTCAGTTATTTATTCCAGGTT
3' ss Score
5.19
5' ss Seq
CAAGTACAT
5' ss Score
1.99
Exon sequences
Seq C1 exon
GAATTGGTGTCCTTCGAAGATGTGACTGTACAGTTCACACAGGAGGAGTGGGCTCTGTTGGATCCTTTACAAAGAACTCTGTACAGGAACGTAACGCTGGAAAACTGGAAGAACCTGGCCTCACTTG
Seq A exon
GTTCCCTCTTGATCATCCCACACATCAGCTTCCATGACCTGATCCCCTGGATTCTTAGGAGACAGCAA
Seq C2 exon
GGCAGCACCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074500_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000034647fB4680
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCTCTGTTGGATCCTT
R:
CTGGATGGATGCCTGGAATAA
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types