MmuEX0053449 @ mm9
Exon Skipping
Gene
ENSMUSG00000074500 | Zfp558
Description
zinc finger protein 558 [Source:MGI Symbol;Acc:MGI:1921681]
Coordinates
chr9:18264101-18272490:-
Coord C1 exon
chr9:18272364-18272490
Coord A exon
chr9:18265784-18265847
Coord C2 exon
chr9:18264101-18264196
Length
64 bp
Sequences
Splice sites
3' ss Seq
AATTCAGTTATTTATTCCAGGTT
3' ss Score
5.19
5' ss Seq
ACAGCAAGT
5' ss Score
1.74
Exon sequences
Seq C1 exon
GAATTGGTGTCCTTCGAAGATGTGACTGTACAGTTCACACAGGAGGAGTGGGCTCTGTTGGATCCTTTACAAAGAACTCTGTACAGGAACGTAACGCTGGAAAACTGGAAGAACCTGGCCTCACTTG
Seq A exon
GTTCCCTCTTGATCATCCCACACATCAGCTTCCATGACCTGATCCCCTGGATTCTTAGGAGACA
Seq C2 exon
GGCAGCACCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074500_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCTCTGTTGGATCCTT
R:
TGTCTTCTTCTTCCAACTGGGA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: