MmuALTA0020704-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000049739 | Zfp646
Description
zinc finger protein 646 [Source:MGI Symbol;Acc:MGI:3665412]
Coordinates
chr7:135020310-135021621:+
Coord C1 exon
chr7:135020310-135020726
Coord A exon
NA
Coord C2 exon
chr7:135021474-135021621
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTACCTTCTACAACACATAGGTG
3' ss Score
5.34
Exon sequences
Seq C1 exon
AGTCGGGCCCACCCGGAACCTAGCGCCGGAAGCGTGTCCGTGCGGAAACACTGCCCGCGGGAGGGACAGGAAGTGTTCCCAGGCGGAAGTTTCGCGGGGAAGCATTAGCATCTAGGACACTTCCTGGTTCCTGGTAACAATAGGAAGTGTCCGCGGAACTGGGCTAGACTCTGGGTTCATACCAGCTGTCCCTGCTCCCTCTACCTCCTCCTCTCTCCCGCACCTTTCCCTCAGCTACCACTCCCGGGTACCCTGGCTGAGTGTGCGTGTGTATGGGCTCGAGAACTCTCGCACCAGCCACCACTTATGGCTCGCGGCTGCAGTTAGGGTAAGGGTCCCAGTGCGCAGGCGCGCTCCCGTTCACGACCTCCAACGGACGCGCCGGCGGCGGGAACCAGAAGGCACTCCTGGTGCGAG
Seq A exon
NA
Seq C2 exon
GTGACCACTGAAGAAAGCAGCTGCTCTGCCATTCTTTTCAGACCACTCGGTTTAGCTGAAGAGTGAAGAAAGAAAGGTTGCACGTCTGTGTAAGGCCTGCCCAACAGTCGTGGCTGTCTCCTTCAATCTCAACTCTCAGGAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049739-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGGTAAGGGTCCCAGTGC
R:
TGAAAAGAATGGCAGAGCAGCT
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: