MmuEX0053527 @ mm9
Exon Skipping
Gene
ENSMUSG00000049739 | Zfp646
Description
zinc finger protein 646 [Source:MGI Symbol;Acc:MGI:3665412]
Coordinates
chr7:135020310-135027432:+
Coord C1 exon
chr7:135020310-135020726
Coord A exon
chr7:135021417-135021621
Coord C2 exon
chr7:135022084-135027432
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTACCTTCTACAACACATAGGTG
3' ss Score
5.34
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AGTCGGGCCCACCCGGAACCTAGCGCCGGAAGCGTGTCCGTGCGGAAACACTGCCCGCGGGAGGGACAGGAAGTGTTCCCAGGCGGAAGTTTCGCGGGGAAGCATTAGCATCTAGGACACTTCCTGGTTCCTGGTAACAATAGGAAGTGTCCGCGGAACTGGGCTAGACTCTGGGTTCATACCAGCTGTCCCTGCTCCCTCTACCTCCTCCTCTCTCCCGCACCTTTCCCTCAGCTACCACTCCCGGGTACCCTGGCTGAGTGTGCGTGTGTATGGGCTCGAGAACTCTCGCACCAGCCACCACTTATGGCTCGCGGCTGCAGTTAGGGTAAGGGTCCCAGTGCGCAGGCGCGCTCCCGTTCACGACCTCCAACGGACGCGCCGGCGGCGGGAACCAGAAGGCACTCCTGGTGCGAG
Seq A exon
GTGACCACTGAAGCCAGGTTCGTCCCTAAGAGGGCCTCTACCTTCTACAACACATAGGTGACCACTGAAGAAAGCAGCTGCTCTGCCATTCTTTTCAGACCACTCGGTTTAGCTGAAGAGTGAAGAAAGAAAGGTTGCACGTCTGTGTAAGGCCTGCCCAACAGTCGTGGCTGTCTCCTTCAATCTCAACTCTCAGGAGTCTGAG
Seq C2 exon
GCCTCAGCCCTTCTGCAGAGAGAATGCTGCTGCCACCTGTCTGTCCCTCCTGAGCCTCCAGGGGTTTTCTACCGCTTTGCCTCATGGAGGACATGCCCCTCTCATTCAGTTGCTCTGACTGTCAGCGCCACTTTCCTAACCTCCCAGAACTGGCACGGCATCGAGAACTGCGCCATTCATCTGCTAAGCAGGACGGGGAGGAAGCCGATGGCATCCCTCACCCCTATGGCAGTCACCCGGAGAACTTGGCCAACCATCAGAGGAACCATGAGACTCTTTTTTTCCCCTGTACCACCTGTGGCAAGGATTTTTCTAATCGCTTGGCCCTCCAGAGCCATATGAGGACTCATGCTCCTGAGAGCCACCGAAGGCACGGGCCTCCACATGCCATGGAAACCGCTCCACACCTTGGGAGTGAGACCATGGCTACTGACTCCTGGGGTCAGAGGCTTGGATCTGGGGAAGGCTGGGAAAATCAGACGAAGTTGGTACGAGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049739_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.517
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.5),PF138941=zf-C2H2_4=WD(100=1.4),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF128742=zf-met=WD(100=1.2),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTATGGGCTCGAGAAC
R:
GTTAGGAAAGTGGCGCTGACA
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types