MmuALTA0020715-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:138616470-138617167:-
Coord C1 exon
chr5:138617055-138617167
Coord A exon
NA
Coord C2 exon
chr5:138616470-138616559
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCTCTACTCTGGAGGTCTAGGTG
3' ss Score
-1.11
Exon sequences
Seq C1 exon
ATCCCTGCTGTCTGAATGGAGGACCACAGTAGGCCACGGGAGGAGGAGAATCAAGATGCTGCAGTTGACAGTCAGGTGACCCTCTGAAGCTCATCTGCCTCTTCAACCATCAG
Seq A exon
NA
Seq C2 exon
GTGGCTGTGCTGTAGACTCTGTTACCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCCATGTCCTGGAAGCCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291-2-4,2-3,2-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCAGTTGACAGTCAGG
R:
GCACGTCACAGGGTAACAGAG
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types