MmuEX0053548 @ mm10
Exon Skipping
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:138612039-138617167:-
Coord C1 exon
chr5:138617055-138617167
Coord A exon
chr5:138616470-138616565
Coord C2 exon
chr5:138612039-138612165
Length
96 bp
Sequences
Splice sites
3' ss Seq
CAGTCTCCTCTACTCTGGAGGTC
3' ss Score
-5.17
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCCCTGCTGTCTGAATGGAGGACCACAGTAGGCCACGGGAGGAGGAGAATCAAGATGCTGCAGTTGACAGTCAGGTGACCCTCTGAAGCTCATCTGCCTCTTCAACCATCAG
Seq A exon
GTCTAGGTGGCTGTGCTGTAGACTCTGTTACCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCCATGTCCTGGAAGCCAGAAATG
Seq C2 exon
GGGCTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGCTGTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGGAGGAGGAGAATCAA
R:
TCTCCAGCATCACATCCCTGT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types