MmuALTA0020733-1/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75799553-75803638:+
Coord C1 exon
chr15:75799553-75799834
Coord A exon
NA
Coord C2 exon
chr15:75803553-75803638
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GTGGCTGTGTACTTCTGCAGGGA
3' ss Score
7.02
Exon sequences
Seq C1 exon
GATTGGCGTATTTCCGCTGGAGAGTTGAAGTCAGTGCGGCGCGCACGGGAGTTGACGTTTAAAGGTGCAGGAGCTGGGGAATCCGACGGTGGTGCTGCTTTGGGTTGCTCTGCTCCGCGCCACTGCGCTTGCGCTGAAGCCGACCCTACCCCCGGCATCCCCCGCGGCCTTCAGATGCGCCGGCGTCTTGCTGCAGCTGCTGCTCTCGGCGAAGCTCGACGAGAGCGCTGCTTCCGACGGGGCAGCGCTCTTCCCGAGCGAGCTAACGGCGATGCTCCTCCG
Seq A exon
NA
Seq C2 exon
GGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429-0-4,0-3,0-2,0-1-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=FE(90.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTGCTGCAGCTGCT
R:
CGGTAAAGGGTCCTCTGGCTA
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: