MmuINT0179754 @ mm9
Intron Retention
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75799615-75803638:+
Coord C1 exon
chr15:75799615-75799834
Coord A exon
chr15:75799835-75803552
Coord C2 exon
chr15:75803553-75803638
Length
3718 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GTGGCTGTGTACTTCTGCAGGGA
3' ss Score
7.02
Exon sequences
Seq C1 exon
AGGTGCAGGAGCTGGGGAATCCGACGGTGGTGCTGCTTTGGGTTGCTCTGCTCCGCGCCACTGCGCTTGCGCTGAAGCCGACCCTACCCCCGGCATCCCCCGCGGCCTTCAGATGCGCCGGCGTCTTGCTGCAGCTGCTGCTCTCGGCGAAGCTCGACGAGAGCGCTGCTTCCGACGGGGCAGCGCTCTTCCCGAGCGAGCTAACGGCGATGCTCCTCCG
Seq A exon
GTGAGCTCGGACCCTCTACCCCCAATCCCTGGCCCCGCGCCCACCTGGGTCCCCTTGGCACGGGCGCTCGGGTTTCCTGCTTCTGGCAGGTACCGCGCTCCGGCGGTCCTAGGGTCTCAGTCTGGGTCTGTCTGCTCCTGCTTTCCAGGACTACAACTTTCTGTTTTAGTGTTTCCCACACTCCCTGCTCTCCGGCCTTGAAGTCCAGCCAGGCTTGTGGCACCAGTTCTGGTGTTCAGATGAGAAATATATATTCTGGTTTTATCATGCAGAGTTTGTGGTTGGCAGTCACTACCCAGACCTGTGTTTCCCGAGCTTCGGGTCTTCCAGGTGTGTCCCAATTTGCAGCCTTGCTAGTCGAGTATAGATAAGAATGCATATCAGCACAGTGTAGGTGGTTGGTTAGTTATGTCGCAATGTCACAAGGTTGAATGCCTCTAGGCGCAACTTTTGTGATAGCTGTTAAAATAATTTATAGCCTGACTGGCCTCAACTTGTGCTGACCCCTTTGCCTCTGTCACCTGAGTGTTAAGATTAGTTAGGTTTTTTTTTTTTCTCTCTCTCTTTTAAAATGTTATCTCTTAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAACCCCCCCCCCCAAAAAAAAAAAAAGTTATCTCTTTCTATGTTAATTTTTAGAAGTGATTCTAGATACTAGTTCTTTGGCAGAAAACGATTTGGAAATTCTTTCTCTGTTGCTTGCCTTTTAATCTTTCTTTAATCTTTCTAACTCCCTTTTAGAATCAGAAACTCTCTTGTTGGTTTCATTAAATGTTGTTTTGTTTGGCTTGCTTTTTAACTATCCCAAACGGTCTTTGACATAGCTTTTTCGTCAAAGTTGGTGTAATGGTTAATTTCTCAACTTGACGCAATCAAGTAATTTGGGAAGAATGTTTCAAGGGATTATTTAGTTCCGGTTGGCTTGTGGGCATGCCTGTGGGGAATTGCCTTGATTAGCTTAATTGATATGAGCGGACCCAGATTTGGGGTCCTGGACTGTGGAAGGTTAGAGAAAGCTAGGTGAGTTCTAAAACTGCATTAGTTCATTCTTCTGCTTTTGACTGATATGACTAGCTGCCTTGACGGGATGGTAACTTGGAATCGTAAGCTAGATAAGCCTTTCTTCTCTAAACTGAACTGATTTTTTTGGGGTTTTTTTTGGGTCGGAACTTTATCATGCAGCAGAGATGAGGCCTAGCCTTGGACTTTTTTGATGATCTTTTTGTTTTTGAGACTGGGCCTATTGCCCTGGCTGTTCTGGTCTTGCTGGCTTGGATCTCAAGAGTTGTGTTGGGATTAAATGTGTGGGCTACCATTCCTGGCCTGGCCTTGAAGTCTTGCTGCTTTTGTCTCTGCCACTCAGTGCTTGGATTATAGACCTACCCCAGCAGTTATTCTTGGAAAACTGTATTTACTGCATGTATATATGAGTGTAGACCGGCACGTGTACCACTCTTCATATCAGGACAGCTAGTGGGAGTAGGTCCTCTCCTCGGGCTATACTGATCTAGGGGATTGAACTCGGGTGACATGAATCACCTTTACCAGCTGAGCCATCTTGCTGACCCAACTTTTTTTTTTCTTTTTTTAAAAATTTATTTTATTTATGAGTACATTGTAGCTGTCTTCAGACACCAGAAGAGGGCATCAGAACCCATTAAAGATGTTTTTTAGCCACCGTGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGGAAAGCAGAGTAGAACTCTTAACCACTGAGCCATCTCTCCAGACACACACACCCCCAACTTTTTTCTTTTAAACTTGGTGTTTTCTGTGTCCTGTGAACAGAGTCTTTCCCTGCCTACCTTGAGTTTATGAAGAAAATTTAATCCTACAGACTTTAAATTTAATTTTTAATTTAATTTTAAAGATTTTTTTTGTTTGTTTGTTTGGCTGGTCCAGAACTAGATAAGTAGATTAGCCTGCCAGATCCTACTGCCTCTTTCTATCATGTCCTGTGATTAAAAGTGTCTATCAGGGACCCAGATAGAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGACCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAACCTAGGATGGGCCTCTGGACTTGCCTTTGGGGAACTATTATAGTTGCTCTTGAGACTTTTTTTTGGTTTTTCGAGACAGGGTTTTTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCAGCTAATCTTAAGACTTCTAGTTTATTTCTCTTTGTGTCCATGACAGGCCTTTGGCTCACCAAGATCCACCCACCCATCCCTCAGCCACCACACCCAACTGGGAGATTTTCTTAATTGGTTAGATGAAGAAAGTTCCGCCTTGAATGTGGGTAGCACCACTTCACTAACTGGGCCCTGCATCAAATGAAAAGGAGAGGGAACAGCCTAGGCAGCCTTGAGGGCTTGGTGGGTCAGTTCTAGCAGTGTGGTGCCCTCCCTCCTGTTGGCAATCAATCCCATTATCACTGCAGTACACCTGCTTGTTACTGTGCTGTTTGCTTACTTTGTAGTCCTGACTACAGAATCAAGATTATCTCTCTCTTGGTAGCAGTGGGATGATCTGAAAGGAGGATCATGCCACGCAGAAGCCGAACCACAACAGTAGCTAGTGATGGTTCCTTTTTTATTTCTTACCATCTGTCTGTCTTCTGTCCTTATTAATTATTTATTTTTTTATTTTTTATTTTTCATTTTTTTATTATTATTATTTTTTTTTCAAGATAGGGGTTCTCTGTAGCCCCGGGCTGTCCTGCAACTGTCTCATTAGATCAGGCTGGCTCTGAACTCAGATCCACCTGTCTCTGCCTCTCAAGTTTGGGATTAAAAGTATGTGCTACTCCATCAGACTAAACTGGGGTGTGACGCGCTCAGCACAGTAGGGATGTTTTCTTTATCAGTAATTTTTCTCATTGCTGTGACAGGCAGCTTAAGGGTTTTGTTAGGCTTGCAGTCTGAAGGGATACAGCCCACCCCGCTGGCAGGCATGTGAGCTGAAGCTGGGCGGATCACATCCTTGTTCATGAGACAGAGAGGGTTTCTCTGTGAAACCCTGGCTGACCTGGAACTCACTCTGTAGACCAGGCTGTCTTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGACTGACTTTTCACCTTTTCATCAGTCTGGAATCACAGTCCAAGGGGTGATAATGCAGAGGTTTCAGGGTTGGTTAGACTTCTCCTAGGTGACCCTCGGTGAATACCGACTGTCACAGAGGTCATTGCTTGTCCTGACACTTCTCCCTGTTCTGCATGTGGGCTTTAGCATGTTCTCTCTGACTCAACTGTCACTCAGTAGCAGGCCATCCTGGGGCCATCTGTTTGTCAGGTGCCAGTGACCTTCAGAGACGTGGCTGTGTACTTCTGCAG
Seq C2 exon
GGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429-Zfp707:NM_001081065:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(6.2=50.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: