MmuALTA0020734-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43311031-43313247:-
Coord C1 exon
chr7:43313104-43313247
Coord A exon
chr7:43311182-43311185
Coord C2 exon
chr7:43311031-43311181
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATTTCCTTCTGTGCCACAGCTA
3' ss Score
6.66
Exon sequences
Seq C1 exon
AAATGTTGTAGTCATTCGAGTGTTACTTCGCTGGCGGGTCCGCGAGGTGGTTTGGAACTTTTCCATCCGGGACTCTTCGGCTTCCGTGGGCGGAAGTCGCCGTCAGGCGTGCCGTGTGCAGAGCTCTCGGCCGGGCAGTGTGAG
Seq A exon
CTAG
Seq C2 exon
CCCTTCTTCAACGTCCATGACTCTTGAGGGATTTGGATTTGCTACGAAGAAAACGTCAAGAACAGAAGACAGAGGGGCCATGGCTGCAGATCCAAATTTCCAACAGAAGAGCCAGCCATTGGGTGCAGAGGAGCAGCCTGAGTCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-0-6,0-5,0-4,0-3-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.659
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGGACTCTTCGGCTTC
R:
AGTCATGGACGTTGAAGAAGGG
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types