MmuALTA0020734-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43311031-43313247:-
Coord C1 exon
chr7:43313104-43313247
Coord A exon
chr7:43311182-43311250
Coord C2 exon
chr7:43311031-43311181
Length
69 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTGGTTGTTGTCTTTTAGTGA
3' ss Score
7.52
Exon sequences
Seq C1 exon
AAATGTTGTAGTCATTCGAGTGTTACTTCGCTGGCGGGTCCGCGAGGTGGTTTGGAACTTTTCCATCCGGGACTCTTCGGCTTCCGTGGGCGGAAGTCGCCGTCAGGCGTGCCGTGTGCAGAGCTCTCGGCCGGGCAGTGTGAG
Seq A exon
TGATTTCCGGTGTCTCTGAGACCACTGCAATCATTCAGGCCTAAGGATTTCCTTCTGTGCCACAGCTAG
Seq C2 exon
CCCTTCTTCAACGTCCATGACTCTTGAGGGATTTGGATTTGCTACGAAGAAAACGTCAAGAACAGAAGACAGAGGGGCCATGGCTGCAGATCCAAATTTCCAACAGAAGAGCCAGCCATTGGGTGCAGAGGAGCAGCCTGAGTCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-0-6,0-5,0-4,0-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.659
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGGTGGTTTGGAACTTT
R:
GGCCCCTCTGTCTTCTGTTCT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types