MmuALTA0020742-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48014848-48016553:-
Coord C1 exon
chr6:48016428-48016553
Coord A exon
chr6:48014949-48014951
Coord C2 exon
chr6:48014848-48014948
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TACTCTCTGTCTTTTCTCAGCAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTGTCCATTCCAACTTTTCAACCACCATCCCACCCACTTCCTGGCAAGCAGATCTCCCTCCCCACCACCCCTCTTCAGCATGCTCAGATGGGACACTGAAGCTCAACACAGCAGCATCCACAGAAG
Seq A exon
CAG
Seq C2 exon
ATGTAAAAATTGTTATCAAAACAGAAGTCCAGGAAGAGGAGGTGGTGGCCACACCTGTTCATCCCACGGACCTGGAGGCTCATGGGACTTTGTTTGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691-6-7,6-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCATGCTCAGATGGGAC
R:
CCACCTCCTCTTCCTGGACTT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: