MmuALTA0020752-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:48898703-48902918:+
Coord C1 exon
chr7:48898703-48898802
Coord A exon
NA
Coord C2 exon
chr7:48902861-48902918
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ATATTTTTGGAGTGCTTTAGGAT
3' ss Score
2.25
Exon sequences
Seq C1 exon
ATGACTTTCCTGTATTAAGTTGACAAAGATAGCACACATGTCAAGAGAAGGGTCTCAAGACACACCTGGCCTGGGTGGTATAACATTGGTTGCTGTCGAG
Seq A exon
NA
Seq C2 exon
GATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGACACACCTGGCCTG
R:
CCCACTCTTCCTCGGTGAAGT
Band lengths:
100-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: