MmuEX0053616 @ mm9
Exon Skipping
Gene
ENSMUSG00000074165 | Zfp788
Description
zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]
Coordinates
chr7:48888573-48902918:+
Coord C1 exon
chr7:48888573-48889064
Coord A exon
chr7:48890050-48890080
Coord C2 exon
chr7:48902861-48902918
Length
31 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGATTCCCCACAGAGG
3' ss Score
9.88
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTCGCTAAAGGGTGCAGACCTGTTCCAGATCCAGGGAGATTTGCATTTAAGCAGAATTGTGTAGTGGGCAGTGCACATGAGCGACCCTGTGCTCTGAAGCAAGGAGTGCCAACTAAGTGCAAGAAGACAGCCGAGCCAGTTCTGGGAGGAAGAAACAGGTTCTGTGTAAATGTAGATCTCACTGGAGCTCATTCAGGTCCGCACATAGGGCCGAAGGCAGGGCTGGGAGTGACTAGCAGTACTGGTCCCTTCAGTCATGTGCAGCTTAAGGATGCTATCACTCAAACATTGCTAGCCAATCAGAGCTTCCAAGTAGGCAGTCCAATCGAGTGCCAGCGGGAGGCGGGATTTCTTGGCCGCCATGCCACCTTCCAAGCTCTAAGACTGAGGTAGTCGCGTTGGAGACGTTGCTCTGTACGAAGTGCACCGCTGTGACAAATTATGAGGCAAATTATGTGAAGAGAGCGGGTGAGCCTGCAAGCCGCGCTATG
Seq A exon
AGGCCTGAAGAGGATGTCGGAGGCCTTGAAG
Seq C2 exon
GATTTAGTTGTCTTTGAGGATGTGGCTGTGAACTTCACCGAGGAAGAGTGGGCTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074165-'0-4,'0-0,1-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.235 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACCGCTGTGACAAATT
R:
CCCACTCTTCCTCGGTGAAGT
Band lengths:
123-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: