MmuALTA0020764-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112245095-112245758:+
Coord C1 exon
chr8:112245095-112245243
Coord A exon
chr8:112245654-112245698
Coord C2 exon
chr8:112245699-112245758
Length
45 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq A exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAG
Seq C2 exon
TGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-8-9,8-8,8-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(39.0=65.7),PF127732=DZR=PU(26.6=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGGTAGTCAAAGTGGA
R:
ACACATGTGCAATCAGCTGCT
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: