MmuALTA0020764-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109721195-109721858:+
Coord C1 exon
chr8:109721195-109721343
Coord A exon
chr8:109721754-109721798
Coord C2 exon
chr8:109721799-109721858
Length
45 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq A exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAG
Seq C2 exon
TGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-15-15,15-14,15-13-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(39.0=65.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGGTAGTCAAAGTGGA
R:
ACACATGTGCAATCAGCTGCT
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types