Special

MmuEX0053642 @ mm10

Exon Skipping

Gene
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109721195-109723053:+
Coord C1 exon
chr8:109721195-109721343
Coord A exon
chr8:109721754-109721858
Coord C2 exon
chr8:109722887-109723053
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq A exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
Seq C2 exon
CATACTGCAGCAGTGGTGAGTGCCAAGAGTTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCAGGGTCTTTGGGTCGCCACCTCCTAATCCATTCAGAAGATCAGCGGTCCAACTGCGCTGTGTGCGGAGCCCGTTTTACCAGCCACGCCACTTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728_MULTIEX1-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=0.086 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF056057=zf-Di19=PU(39.0=65.7)
C2:
PF116003=CAF-1_p150=PU(2.8=11.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGGTAGTCAAAGTGGA
R:
AAAGTGGCGTGGCTGGTAAAA
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types