GgaEX0000799 @ galGal3
Exon Skipping
Gene
ENSGALG00000000817 | ZNF821
Description
NA
Coordinates
chr11:21710192-21712827:+
Coord C1 exon
chr11:21710192-21710334
Coord A exon
chr11:21710890-21710994
Coord C2 exon
chr11:21712763-21712827
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTCCTTTCCTGTAGGTT
3' ss Score
11.64
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGCAGTGATGATGAGGAAACCACCCACGATGAAGTTTCTTCCCATACTTCAGAGGAGGATGGCTCAATGCTAAAGGTGAAGAAAGAACTGGAGAATGCAGAACAACATGCAGCTGGAACCCCACTGATGAGAGAGAATGAG
Seq A exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
Seq C2 exon
TGAGAAGCTGACAGAGGTGCTCAGTGCAGATCGCCTGCCTATGCCACAGAGCGAGGGCCCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.143 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
C2:
PF127732=DZR=PD(1.3=0.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGATGATGAGGAAACCA
R:
CGCTCTGTGGCATAGGCAG
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]