RnoEX0101714 @ rn6
Exon Skipping
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41942597-41944598:-
Coord C1 exon
chr19:41944450-41944598
Coord A exon
chr19:41943957-41944061
Coord C2 exon
chr19:41942597-41942763
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAGAGAATTAGACAGTGCAGAAGCACCTGTCGGTAGTGGGGACGCACTGGTGGAGCACGAG
Seq A exon
GTCACAGAGAACCTAAATTCTGACCCCTTACTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCCCATGTGTACCAG
Seq C2 exon
CATACTGCAGCGGTGGTGAGTGCCAAGAGTTACATGTGCCCTGTCTGTGGACGGGCCCTTAGCTCCCCAGGGTCTCTGGGTCGCCACCTCCTAATCCACTCAGAAGATCAGCGGTCTAACTGTGCTGTGTGTGGAGCCCGCTTTACTAGCCATGCTACTTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=PU(39.0=65.7)
C2:
PF056057=zf-Di19=PD(57.6=60.7),PF116003=CAF-1_p150=PU(3.9=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACGAAGAGGAGACCAC
R:
ACCGCTGATCTTCTGAGTGGA
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]