GgaEX0000799 @ galGal4
Exon Skipping
Gene
ENSGALG00000000817 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr11:19182323-19186003:+
Coord C1 exon
chr11:19182323-19182465
Coord A exon
chr11:19183021-19183125
Coord C2 exon
chr11:19184894-19186003
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTCCTTTCCTGTAGGTT
3' ss Score
11.64
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGCAGTGATGATGAGGAAACCACCCACGATGAAGTTTCTTCCCATACTTCAGAGGAGGATGGCTCAATGCTAAAGGTGAAGAAAGAACTGGAGAATGCAGAACAACATGCAGCTGGAACCCCACTGATGAGAGAGAATGAG
Seq A exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
Seq C2 exon
TGAGAAGCTGACAGAGGTGCTCAGTGCAGATCGCCTGCCTATGCCACAGAGCGAGGGCCCCTCCAGCATCAAAGGGAAGGACATTACCTTTCACAGCCCTGTGTATCCTGCAGGCATCCTCCTAGTGTGCAACAACTGTGCTGCTTATCGTAAGCTGCTGGAGGCACAGACACCTGGCATGCGAAAGTGGGCGCTTCGTAGGCAGAACGAGCCCTTGGAAGTGCGTCTGCAGCGTTTGGAGCGGGAGCGCACTGCCAAGAAGAGCCGGCGGGACAATGAGACTCCTGAGGAGCGGGAGGTGAGACGTATGCGGGATCGAGAGGCAAAGCGCCTGCAGCGCATGCAGGAGACAGATGAACAGCGGGCACGGCGGCTACAGCGAGACCGAGAAGCCATGCGAGTGAAACGTGCCAATGAAACTCCAGAGAAACGACAGGCCCGGCTCATCCGGGAGCGTGAGGCCAAGAGGTTGAAGCGGCGCCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.143 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
C2:
PF127732=DZR=PD(1.3=0.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAACCACCCACGATGA
R:
CTAGGAGGATGCCTGCAGGAT
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]