BtaEX6081301 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39364773-39366819:+
Coord C1 exon
chr18:39364773-39364918
Coord A exon
chr18:39365609-39365713
Coord C2 exon
chr18:39366653-39366819
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCCTACTTGTTGTGTTGCAGGTC
3' ss Score
10.63
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGACAGTGAGGGAGATGAAGAGGAGACCACACAAGATGAAGTCTCTTCCCATACGTCAGAGGAAGATGGAGGAGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGAAAGAAAGTAGTAGAGCATGAG
Seq A exon
GTCACGGAGAATTTGCATTCTGACCCGTTACTTGGACTCTGCCAGTGTCCCCTCTGCCAGCTCGACTGTGGGAGTCGGGAGCAGCTGATTGCTCACGTGTACCAG
Seq C2 exon
CACACTGCAGCCGTGGTGAGCGCCAAGAGCTACATGTGTCCCGTCTGTGGCCGGGCCCTCAGCTCCCCAGGGTCACTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGGTCGAACTGTGCTGTGTGTGGAGCCCGTTTCACTAGCCATGCCACATTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.076 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=PU(37.9=62.9),PF127732=DZR=PU(26.6=60.0)
C2:
PF056057=zf-Di19=PD(58.6=60.7),PF127732=DZR=FE(69.6=100),PF116003=CAF-1_p150=PU(3.9=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCAGAGGAAGATGGAGGA
R:
CTAGTGAAACGGGCTCCACAC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]