HsaEX0074410 @ hg19
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71893589-71898951:-
Coord C1 exon
chr16:71898806-71898951
Coord A exon
chr16:71898041-71898145
Coord C2 exon
chr16:71893589-71894575
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCCTATTTGTTGAATCACAGGTC
3' ss Score
6.76
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAG
Seq A exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
Seq C2 exon
TGAGAAACTTCCTGAAGTACTAAATATGGAATCCCTACCCACAGTCCACAATGAGGGTCCCTCCAGTGCTGAGGGGAAGGATATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTGTGCAACAACTGTGCTGCCTACCGTAAACTGCTGGAAGCCCAGACTCCCAGTGTACGCAAGTGGGCTCTACGTCGACAGAATGAGCCTTTGGAAGTACGGCTGCAGCGGCTGGAACGAGAGCGCACGGCCAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGTGAAGCCAAGCGCTTGCAGCGCATGCAGGAGACAGACGAGCAGCGGGCACGCCGGCTGCAGCGGGATCGGGAGGCCATGAGGCTGAAGCGGGCCAATGAAACCCCGGAAAAGCGGCAGGCCCGGCTCATCCGAGAGCGAGAGGCCAAGCGGCTCAAGAGGAGGCTGGAGAAAATGGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984_MULTIEX1-3/4=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.086 C2=0.693
Domain overlap (PFAM):
C1:
NO
A:
PF0105613=Myc_N=PD(20.2=66.7)
C2:
PF127732=DZR=PD(1.2=0.5),PF116003=CAF-1_p150=PD(96.6=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTGGTCAAAGTGGAGAA
R:
TACACTGGGAGTCTGGGCTTC
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)