MmuALTA0020766-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79175833-79179079:+
Coord C1 exon
chr8:79175833-79175970
Coord A exon
chr8:79178890-79178909
Coord C2 exon
chr8:79178910-79179079
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTCTTTTTTGAGAGCAGTTT
3' ss Score
0.44
Exon sequences
Seq C1 exon
AGACCGAGAAGATTGTCCTTGAGGCAGGAAACGGACTGCCATCCTGGAAATTCAATGACCAGCTCTTCCCTTGCGATGTGTGTGGGAAAGTGTTCGGACGACAGCAGACATTGTCTCGACACCTCTCATTGCACACAG
Seq A exon
TTTTGGTTTCTCCCCCAGAG
Seq C2 exon
GAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCGAACCTGAACCAGCATCTGACCGTGCACTCTGTGAAGCTCGTGAGTACCGACACCGAGGACATAGTCAGTGCTGTCACTTCTGAGGGCAGTGATGGGAAGAAACACCCGTATTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-27-25,27-24,27-23,27-22-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=41.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGGGAAAGTGTTCGG
R:
CACTTAGCAGCATAGGGGCAC
Band lengths:
106-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types