RnoALTA0045846-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32411145-32414840:-
Coord C1 exon
chr19:32414703-32414840
Coord A exon
chr19:32411315-32411334
Coord C2 exon
chr19:32411145-32411314
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTTCTTTTTTGAGAGCAGTTT
3' ss Score
-0.28
Exon sequences
Seq C1 exon
AGACAGATAAGATCGTCCTTGAGGCAGGAAACGGACTGCCGTCCTGGAAGTTCAGTGACCAGCTCTTCCCTTGTGACGTGTGTGGGAAGGTGTTCGGCCGACAGCAGACATTGTCTCGGCACCTCTCCTTGCACACAG
Seq A exon
TTTTGGTTTCTCCCCCAGAG
Seq C2 exon
GAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCAAACCTGAACCAGCACCTGACCGTGCACTCTGTGAAGCTCGTGAGTACAGACACTGAGGACATAGTCAGTGCTGTCACCTCGGAAGGCAGTGATGGGAAGAAACACCCTTATTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-21-26,21-25,21-24,21-23-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACATTGTCTCGGCACCTC
R:
GTCAGGTGCTGGTTCAGGTTT
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]