MmuALTA0020776-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059839 | Zfp874b
Description
zinc finger protein 874b [Source:MGI Symbol;Acc:MGI:3040702]
Coordinates
chr13:67481719-67484225:-
Coord C1 exon
chr13:67484141-67484225
Coord A exon
NA
Coord C2 exon
chr13:67481719-67481857
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTCATTAGTCGTTATTTCAGGAA
3' ss Score
3.96
Exon sequences
Seq C1 exon
TTTTGGTAAGCATGTGCGGCTCTTATCCAAAGCTGGGCCAGACTCTGGTCCTGCTGTGCTCTCCCGTTGGATCTCTGACATGGAG
Seq A exon
NA
Seq C2 exon
TCGTTATTTCAGGAAATGCTGTCCTTCCGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGGGACTACCTGGGTCCTGCTCAGTGGGATCTGTACAGAGACGTGATGCTGGAGAATTATAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059839-0-3,0-2,0-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types