MmuEX0053682 @ mm10
Exon Skipping
Gene
ENSMUSG00000059839 | Zfp874b
Description
zinc finger protein 874b [Source:MGI Symbol;Acc:MGI:3040702]
Coordinates
chr13:67471514-67484225:-
Coord C1 exon
chr13:67484141-67484225
Coord A exon
chr13:67481719-67481845
Coord C2 exon
chr13:67471514-67474951
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCATTAGTCGTTATTTCAGGAA
3' ss Score
3.96
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTTTGGTAAGCATGTGCGGCTCTTATCCAAAGCTGGGCCAGACTCTGGTCCTGCTGTGCTCTCCCGTTGGATCTCTGACATGGAG
Seq A exon
GAAATGCTGTCCTTCCGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGGGACTACCTGGGTCCTGCTCAGTGGGATCTGTACAGAGACGTGATGCTGGAGAATTATAGCCACCTTGTGTTCCTGG
Seq C2 exon
GAACAACAGGCAATGAATTTAACAATCACAATGAGGCCATTGATCACAGCTCTCTAAGTATGCAATGCCAGAGAATTCATACAGGAGAGGAACCCTACTACTTTGAAGACTGTGGTAAGGCCCTTAGTTCTCAGGCAACACTTTCTGTACTCCAGAGACGTTATAGTGGAGACAAACCCTACAAGTGTAAAGAATGTCATAAAACACTTAGCAGTCGCTCATCACTTTTAATACACCAGAAATATCATACTGATGAGAAAACCTACAAGTGTGAAAAATGTGGCAAACGGTTTTTGCGTTCCTCACATCTTCAGCATCATCAAAAAATTCATACTGGAGAGAAACCATACAAATGTGAAGAGTGTGACAAAGCCTTTCTTCATCACTCATATCTTAGGAAACACCAGGCAGTTCATACTGGAGAGAAACCCTACAAGTGTGAAGAGTGTGGAAATTCATTTTACTATCCTGCAATGCTGAAGCAACATCAAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059839_MULTIEX1-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCTTATCCAAAGCTGGG
R:
ACACTTGTAGGGTTTGTCTCCAC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types