MmuALTA0020872-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56950177-56956294:+
Coord C1 exon
chr14:56950177-56950328
Coord A exon
chr14:56956180-56956225
Coord C2 exon
chr14:56956226-56956294
Length
46 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTCAATAATTTTTTTTGTAGTAC
3' ss Score
5.04
Exon sequences
Seq C1 exon
CTAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACCACAGCTGAGCTTAACTATGGGTTAGCCCATTTTGTCAATGAGATCAGACGACCAAATGGAGAGAATTATGCACCTGACAGCATCTATTATCTATGCCTTGGTATACAGGAG
Seq A exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAG
Seq C2 exon
GATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-42-35,42-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAATGAGATCAGACGACCA
R:
CTTGGTTGCCAACTTCGGAGT
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types