RnoALTA0045983-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37217934-37223687:+
Coord C1 exon
chr15:37217934-37218085
Coord A exon
chr15:37223573-37223618
Coord C2 exon
chr15:37223619-37223687
Length
46 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCAATAATTTTTTTGTAGTAC
3' ss Score
4.49
Exon sequences
Seq C1 exon
CCAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACTACAGCTGAGCTCAACTATGGCTTAGCCCATTTTGTCAATGAGATCCGACGACCAAATGGAGAGAATTATGCCCCTGACAGCATCTATTATCTCTGCCTTGGAATACAGGAG
Seq A exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAG
Seq C2 exon
GATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-37-43,37-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACGACCAAATGGAGAGA
R:
TGGAAGTATGCTTGGTTGCCA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]