Special

MmuALTA0020876-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98612248-98612669:-
Coord C1 exon
chrX:98612626-98612669
Coord A exon
chrX:98612315-98612320
Coord C2 exon
chrX:98612248-98612314
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCCCCGCCCCTCTTTCCAAGGTA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
Seq A exon
GTACAG
Seq C2 exon
AAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAGCCTGAGGTTGTGGACTCCACTGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-8-15,8-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068197





     
                   









    
Main Skipping Isoform:
ENSMUSP00000113225





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112399, ENSMUSP00000112497, ENSMUSP00000113462, ENSMUSP00000114005, ENSMUSP00000114118, ENSMUSP00000118986
          









    
Other Skipping Isoforms:
ENSMUSP00000112475, ENSMUSP00000113049
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chrX:70471028-70471100 
LOW PSI
HsaALTA0009716-2/2
(ZMYM3)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chrX:84692503-84692575 
ALTERNATIVE
BtaALTA0033822-2/2
(ZMYM3)
Chicken
(galGal4)
chr4:2273040-2273041 
Chicken
(galGal3)
chr4:2282040-2282041 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGCCTGACTGGGAAGGAGATT

				
R: 
GTCCACAACCTCAGGCTTTGG

				
Band lengths: 
93-99

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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