HsaALTA0009716-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70471028-70471451:-
Coord C1 exon
chrX:70471408-70471451
Coord A exon
chrX:70471095-70471100
Coord C2 exon
chrX:70471028-70471094
Length
6 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TCCCCTCCCATCTTTCCGAGGTA
3' ss Score
2.93
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGCGAAGGCGAGTGAGAAGCCGCCTGAACGG
Seq A exon
GTACAG
Seq C2 exon
AAGAGAAGCGAGCGCGTTAGGAGAGCAGAACCTCCAAAACCTGAGGTTGTAGATTCCACTGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCCTGACTGCGAAG
R:
ACAACCTCAGGTTTTGGAGGT
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)