RnoALTA0045987-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71311513-71311934:-
Coord C1 exon
chrX:71311891-71311934
Coord A exon
chrX:71311580-71311585
Coord C2 exon
chrX:71311513-71311579
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCCCTGCCCCTCTTTCCAAGGTA
3' ss Score
9.22
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
Seq A exon
GTACAG
Seq C2 exon
AAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAACCCGAGGTTGTGGACTCCACTGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-2-8,2-7,2-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGACTGGGAAGGAGATT
R:
AGTCCACAACCTCGGGTTTTG
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]