MmuALTA1000115-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000290 | Itgb2
Description
integrin beta 2 [Source:MGI Symbol;Acc:MGI:96611]
Coordinates
chr10:77530252-77542026:+
Coord C1 exon
chr10:77530252-77530459
Coord A exon
NA
Coord C2 exon
chr10:77541966-77542026
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCTGCTCCTTCTCTCCACAGGAC
3' ss Score
14.48
Exon sequences
Seq C1 exon
AGGGGCTGAGGTGATACCCACATGTGGGCCAATCAGCCAAATGTCACTCAACTTCCTCCTGGGCGCTGACTTAGAACAGGAAGTGTCAGGCGGGGGGGCCTCAGCGGCTGTGTTCTTTAGACACAACCACACAGCCAGCTGGCAAGAAGTAGGCAAAGACATCTCCAGTCAGATTCTCGGAGTGGAGGCTTCCTGGGACTGAGAGGGG
Seq A exon
NA
Seq C2 exon
GACATGCTGGGCCCACACTCACTGCTGCTTGCCCTAGCTGGACTGTTCTTCCTGGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000290-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCGGCTGTGTTCTTTA
R:
TCCCAGGAAGAACAGTCCAGC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types